Package: scCAN 1.0.5
scCAN: Single-Cell Clustering using Autoencoder and Network Fusion
A single-cell Clustering method using 'Autoencoder' and Network fusion ('scCAN') Bang Tran (2022) <doi:10.1038/s41598-022-14218-6> for segregating the cells from the high-dimensional 'scRNA-Seq' data. The software automatically determines the optimal number of clusters and then partitions the cells in a way such that the results are robust to noise and dropouts. 'scCAN' is fast and it supports Windows, Linux, and Mac OS.
Authors:
scCAN_1.0.5.tar.gz
scCAN_1.0.5.zip(r-4.5)scCAN_1.0.5.zip(r-4.4)scCAN_1.0.5.zip(r-4.3)
scCAN_1.0.5.tgz(r-4.4-any)scCAN_1.0.5.tgz(r-4.3-any)
scCAN_1.0.5.tar.gz(r-4.5-noble)scCAN_1.0.5.tar.gz(r-4.4-noble)
scCAN_1.0.5.tgz(r-4.4-emscripten)scCAN_1.0.5.tgz(r-4.3-emscripten)
scCAN.pdf |scCAN.html✨
scCAN/json (API)
# Install 'scCAN' in R: |
install.packages('scCAN', repos = c('https://strancsus.r-universe.dev', 'https://cloud.r-project.org')) |
- SCE - SCE
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:cc0ee4fc5d. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 12 2024 |
R-4.5-win | OK | Nov 12 2024 |
R-4.5-linux | OK | Nov 12 2024 |
R-4.4-win | OK | Nov 12 2024 |
R-4.4-mac | OK | Nov 12 2024 |
R-4.3-win | OK | Nov 12 2024 |
R-4.3-mac | OK | Nov 12 2024 |
Exports:adjustedRandIndexcalculate_celltype_probcurate_markersget_cluster_markersscCAN
Dependencies:BHbitbit64callrcliclustercodetoolscorocpp11descdoParalleldqrngellipsisFNNforeachglueigraphirlbaiteratorsjsonlitelatticelifecyclemagrittrMatrixmatrixStatspkgconfigprocessxpspurrrR6RcppRcppAnnoyRcppArmadilloRcppEigenRcppParallelRcppProgressRhpcBLASctlrlangRSpectrasafetensorsscDHAsitmotorchuwotvctrswithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
adjustedRandIndex | adjustedRandIndex |
calculate_celltype_prob | calculate_celltype_prob |
curate_markers | curate_markers |
find_markers | find_markers |
find_specific_marker | find_specific_marker |
get_cluster_markers | get_cluster_markers |
scCAN | scCAN |
SCE | SCE |